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Salmon cmake command not found5/5/2023 share/salmon/ external/ install/include/rapmap/RapMapUtils.hpp: 438: 23: warning: comparison between signed and unsigned integer expressions Ĭd / share/salmon/src & /usr/ bin/cmake -E cmake_link_script CMakeFiles/salmon.dir/link.txt -verbose=1 share/salmon/ external/ install/include/rapmap/RapMapUtils.hpp: In function ‘void rapmap::utils::adjustOverhang(int32_t&, uint32_t, uint32_t, rapmap::utils::FixedWriter&)’: In file included from / share/salmon/ external/ install/include/rapmap/RapMapSAIndex.hpp: 24: 0,įrom / share/salmon/include/SalmonIndex.hpp: 20,įrom / share/salmon/include/ReadExperiment.hpp: 19,įrom / share/salmon/include/CollapsedEMOptimizer.hpp: 9,įrom / share/salmon/src/SalmonQuantifyAlignments.cpp: 62: Building CXX object src/CMakeFiles/salmon.dir/Ĭd / share/salmon/src & /usr/ bin/c++ -pthread -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-reorder -Wno-unused-variable - std=c++ 11 -Wreturn-type -Werror= return-type -static-libstdc++ -Wno-deprecated-register -Wno-unused- local-typedefs -I/ share/salmon/include -I/ share/salmon/include/eigen3 -I/ share/salmon/ external -I/ share/salmon/ external/cereal/include -I/ share/salmon/ external/ install/include -I/ share/salmon/ external/ install/include/jellyfish- 2.2.3 -I/ share/salmon/ external/ install/include/bwa -I/ share/salmon/ external/ install/include/rapmap -o CMakeFiles/salmon.dir/ -c / share/salmon/src/SalmonQuantifyAlignments.cpp usr/ bin/cmake -E cmake_progress_report / share/salmon/CMakeFiles share/salmon/src/AlignmentModel.cpp: 446: 36: warning: comparison between signed and unsigned integer expressions Ĭc1plus: warning: unrecognized command line option "-Wno-deprecated-register" share/salmon/src/AlignmentModel.cpp: In member function ‘void AlignmentModel:: update(bam_seq_t*, Transcript&, double, double, std::vector >&)’: share/salmon/src/AlignmentModel.cpp: 268: 32: warning: comparison between signed and unsigned integer expressions share/salmon/src/AlignmentModel.cpp: In member function ‘ double AlignmentModel::logLikelihood(bam_seq_t*, Transcript&, std::vector >&)’: Hey having problems with install Building CXX object src/CMakeFiles/salmon.dir/Ĭd /share/salmon/src & /usr/bin/c++ -pthread -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -static-libstdc++ -Wno-deprecated-register -Wno-unused-local-typedefs -I/share/salmon/include -I/share/salmon/include/eigen3 -I/share/salmon/external -I/share/salmon/external/cereal/include -I/share/salmon/external/ install/include -I/ share/salmon/ external/ install/include/jellyfish- 2.2.3 -I/ share/salmon/ external/ install/include/bwa -I/ share/salmon/ external/ install/include/rapmap -o CMakeFiles/salmon.dir/ -c / share/salmon/src/AlignmentModel.cpp
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